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Version 1.0.1 - Tue 14 Dec 2004
by John Gruber
http://daringfireball.net/
Introduction
Markdown is a text-to-HTML conversion tool for web writers. Markdownallows you to write using an easy-to-read, easy-to-write plain textformat, then convert it to structurally valid XHTML (or HTML).
Thus, 'Markdown' is two things: a plain text markup syntax, and asoftware tool, written in Perl, that converts the plain text markup to HTML.
Markdown works both as a Movable Type plug-in and as a standalone Perlscript -- which means it can also be used as a text filter in BBEdit(or any other application that supporst filters written in Perl).
Full documentation of Markdown's syntax and configuration options isavailable on the web: http://daringfireball.net/projects/markdown/.(Note: this readme file is formatted in Markdown.)
Installation and Requirements
Markdown requires Perl 5.6.0 or later. Welcome to the 21st Century.Markdown also requires the standard Perl library module Digest::MD5
.
Movable Type
Markdown works with Movable Type version 2.6 or later (including MT 3.0 or later).
Our lost world beneath the skies mac os. Copy the 'Markdown.pl' file into your Movable Type 'plugins' directory. The 'plugins' directory should be in the same directory as 'mt.cgi'; if the 'plugins' directory doesn't already exist, use your FTP program to create it. Your installation should look like this:
Once installed, Markdown will appear as an option in Movable Type's Text Formatting pop-up menu. This is selectable on a per-post basis. Markdown translates your posts to HTML when you publish; the posts themselves are stored in your MT database in Markdown format.
If you also install SmartyPants 1.5 (or later), Markdown will offer a second text formatting option: 'Markdown with SmartyPants'. This option is the same as the regular 'Markdown' formatter, except that automatically uses SmartyPants to create typographically correct curly quotes, em-dashes, and ellipses. See the SmartyPants web page for more information: http://daringfireball.net/projects/smartypants/
To make Markdown (or 'Markdown with SmartyPants') your default text formatting option for new posts, go to Weblog Config -> Preferences.
Note that by default, Markdown produces XHTML output. To configureMarkdown to produce HTML 4 output, see 'Configuration', below.
Blosxom
Markdown works with Blosxom version 2.x.
Smultron 9 9 2 2. Rename the 'Markdown.pl' plug-in to 'Markdown' (case is important). Movable Type requires plug-ins to have a '.pl' extension; Blosxom forbids it.
Copy the 'Markdown' plug-in file to your Blosxom plug-ins folder. If you're not sure where your Blosxom plug-ins folder is, see the Blosxom documentation for information.
That's it. The entries in your weblog will now automatically be processed by Markdown.
If you'd like to apply Markdown formatting only to certain posts, rather than all of them, see Jason Clark's instructions for using Markdown in conjunction with Blosxom's Meta plugin:
BBEdit
Covid19 - overcoming mac os. Markdown works with BBEdit 6.1 or later on Mac OS X. (It also workswith BBEdit 5.1 or later and MacPerl 5.6.1 on Mac OS 8.6 or later.)
Copy the 'Markdown.pl' file to appropriate filters folder in your 'BBEdit Support' folder. On Mac OS X, this should be:
See the BBEdit documentation for more details on the location ofthese folders.
You can rename 'Markdown.pl' to whatever you wish.
That's it. To use Markdown, select some text in a BBEdit document, then choose Markdown from the Filters sub-menu in the '#!' menu, or the Filters floating palette
Configuration
By default, Markdown produces XHTML output for tags with empty elements.E.g.:
Markdown can be configured to produce HTML-style tags; e.g.:
Movable Type
You need to use a special MTMarkdownOptions
container tag in eachMovable Type template where you want HTML 4-style output:
The easiest way to use MTMarkdownOptions is probably to put theopening tag right after your tag, and the closing tag rightbefore
.
To suppress Markdown processing in a particular template, i.e. topublish the raw Markdown-formatted text without translation into(X)HTML, set the output
attribute to 'raw':
Command-Line
Use the --html4tags
command-line switch to produce HTML output from aUnix-style command line. E.g.:
Type perldoc Markdown.pl
, or read the POD documentation within theMarkdown.pl source code for more information.
Bugs
To file bug reports or feature requests please send email to:markdown@daringfireball.net.
Version History
1.0.1 (14 Dec 2004):
Changed the syntax rules for code blocks and spans. Previously, backslash escapes for special Markdown characters were processed everywhere other than within inline HTML tags. Now, the contents of code blocks and spans are no longer processed for backslash escapes. This means that code blocks and spans are now treated literally, with no special rules to worry about regarding backslashes.
NOTE: This changes the syntax from all previous versions ofMarkdown. Code blocks and spans involving backslash characterswill now generate different output than before.
Tweaked the rules for link definitions so that they must occur within three spaces of the left margin. Thus if you indent a link definition by four spaces or a tab, it will now be a code block.
IMPORTANT: This may affect existing Markdown content if itcontains link definitions indented by 4 or more spaces.
Added
>
,+
, and-
to the list of backslash-escapable characters. These should have been done when these characters were added as unordered list item markers.Trailing spaces and tabs following HTML comments and
tags are now ignored.Inline links using
<
and>
URL delimiters weren't working:Added a bit of tolerance for trailing spaces and tabs after Markdown hr's.
Fixed bug where auto-links were being processed within code spans:
Sort-of fixed a bug where lines in the middle of hard-wrapped paragraphs, which lines look like the start of a list item, would accidentally trigger the creation of a list. E.g. a paragraph that looked like this:
This is fixed for top-level lists, but it can still happen forsub-lists. E.g., the following list item will not be parsedproperly:
Given Markdown's list-creation rules, I'm not sure this canbe fixed.
Standalone HTML comments are now handled; previously, they'd get wrapped in a spurious
tag.
Fix for horizontal rules preceded by 2 or 3 spaces.
HTML tags in must occur within three spaces of left margin. (With 4 spaces or a tab, they should be code blocks, but weren't before this fix.)Capitalized 'With' in 'Markdown With SmartyPants' for consistency with the same string label in SmartyPants.pl. (This fix is specific to the MT plug-in interface.)
Auto-linked email address can now optionally contain a 'mailto:' protocol. I.e. these are equivalent:
Fixed annoying bug where nested lists would wind up with spurious (and invalid)
You can now write empty links:
and they'll be turned into anchor tags with empty href attributes.This should have worked before, but didn't.
***this***
and___this___
are now turned intoInstead of
which isn't valid. (Thanks to Michel Fortin for the fix.)
Added a new substitution in
_EncodeCode()
: s/$/$/g; This is only for the benefit of Blosxom users, because Blosxom (sometimes?) interpolates Perl scalars in your article bodies.Fixed problem for links defined with urls that include parens, e.g.:
'Chomsky' was being erroneously treated as the URL's title.
At some point during 1.0's beta cycle, I changed every sub's argument fetching from this idiom:
to:
The idea was to keep Markdown from doing any work in a subif the input was empty. This introduced a bug, though:if the input to any function was the single-character string'0', it would also evaluate as false and return immediately.How silly. Now fixed.
Donations
Donations to support Markdown's development are happily accepted. See:http://daringfireball.net/projects/markdown/ for details.
Copyright and License
Copyright (c) 2003-2004 John Gruber
http://daringfireball.net/
All rights reserved.
Redistribution and use in source and binary forms, with or withoutmodification, are permitted provided that the following conditions aremet:
Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
Neither the name 'Markdown' nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
This software is provided by the copyright holders and contributors 'asis' and any express or implied warranties, including, but not limitedto, the implied warranties of merchantability and fitness for aparticular purpose are disclaimed. In no event shall the copyright owneror contributors be liable for any direct, indirect, incidental, special,exemplary, or consequential damages (including, but not limited to,procurement of substitute goods or services; loss of use, data, orprofits; or business interruption) however caused and on any theory ofliability, whether in contract, strict liability, or tort (includingnegligence or otherwise) arising in any way out of the use of thissoftware, even if advised of the possibility of such damage.
List of Features
- basic features:
- runs on Linux and Mac OS X
- multi-dimensional operations on arrays
- fast non-uniform Fourier Transform (nuFFT and convolution-based method)
- multi-dimensional (divergence-free) wavelet transform
- parallel computation on multiple cores and with Graphical Processing Units (GPU)
- iterative methods:
- Conjugate Gradients (CG)
- (Fast) Iterative Soft-Thresholding Algorithm (ISTA and FISTA)
- Normalized iterative hard thresholding (NIHT)
- Alternating Direction Method of Multipliers (ADMM)
- Iteratively Regularized Gauss-Newton Method (IRGNM)
- Chambolle-Pock primal-dual algorithm
- calibration methods:
- direct calibration of coil sensitivities from k-space center
- Walsh's method for calibration of coil sensitivities
- ESPIRiT
- (geometric) channel compression and whitening
- RING: estimation of gradient delays for radial MRI
- reconstruction methods for MRI:
- iterative parallel imaging reconstruction: POCSENSE, SENSE
- compressed sensing and parallel imaging
- calibration-less parallel imaging: NLINV and ENLIVE (non-linear optimization) and SAKE (structured low-rank matrix completion)
- reconstruction with linear subspace constraints
- non-linear model-based reconstruction for T1 mapping
- regularization (in arbitrary dimensions):
- Tikhonov
- total variation
- l1-wavelet
- (multi-scale) low-rank
Example
Perform ESPIRiT calibration and image reconstruction with l1-wavelet regularization:
$ bart ecalib kspace sensitivities
$ bart pics -l1 -r0.001 kspace sensitivities image_out
A python-based image viewer (bartview.py) which can read the BART data format is included in the source repository.
An image viewer for Linux and Mac OS X can be found here.
You can try BART directly in your browser:
Mailing List
Please direct all questions or comments to the public mailing list:
(or contact the main author: martin.uecker at med.uni-goettingen.de)
Download
Note: The software is intended for research use only and NOT FOR DIAGNOSTIC USE. It comes without any warranty (see LICENSE for details).
Releases:
It is recommended to download the latest release. All releases can be found here.
Selected releases:
BART has also been included in Debian GNU/Linux (and Ubuntu). The Debian binary package can be reproducibly built from the source code (as distributed by Debian) and can be downloaded from here. Enter the silence mac os. There is also a package for the image viewer. We also provide unofficial packages for Fedora and CentOS: .
Please note that running BART on Windows is not supported. Nevertheless, some versions of BART are reported to work on Windows using WSL or Cygwin.
For developers: the C source code can be found in the GitHub repository
Installation
Installation of the required libraries, downloading and unpacking of the archive, and compilation on Linux is usually as simple as typing the following commands:
$ sudo apt-get install make gcc libfftw3-dev liblapacke-dev libpng-dev libopenblas-dev
$ wget https://github.com/mrirecon/bart/archive/vX.Y.ZZ.tar.gz
$ tar xzvf vX.YY.ZZ.tar.gz
$ cd bart-X.YY.ZZ
$ make
See the README file included with the source code for further instructions and for Mac OS X and Windows.
If you are a Docker user you can also start with this extremely simple Dockerfile.
Matlab Interface and Examples
The toolbox can also be used in combination with Matlab/Octave.
>> sensitivities = bart('ecalib', kspace);
>> image_out = bart('pics -l1 -r0.001', kspace, sensitivities);
More examples where the tools are called directly from Matlab can be found here.
Miki Miki Academy Demo Mac Os Catalina
Matlab code and data: GitHub repository
A Matlab-based image viewer which works well with BART is arrayShow by Tilman Sumpf.
Webinar and Workshop Materials with Examples
There are new tutorials from our Webinar which you can find in a GitHub repository.
The toolbox was presented at the ISMRM 2016 Data Sampling and Image Reconstruction Workshop. This material was created for BART version 0.3.00 and later versions might have minor differences. Please check the README included with each release for up-to-date installation instructions.
Miki Miki Academy Demo Mac Os X
Demo code and data: GitHub repository
Reproducible Research
This is a list of research paper which can be reproduced using BART.
- Xiaoqing Wang, Sebastian Rosenzweig, Nick Scholand, H.Christian M.Holme, Martin Uecker. Model-based Reconstruction for Simultaneous Multi-slice T1 Mapping using Single-shot Inversion-recovery Radial FLASH. Magnetic Resonance in Medicine. Early access. GitHub repository
- Sebastian Rosenzweig, Nick Scholand, H. Christian M. Holme, Martin Uecker. Cardiac and Respiratory Self-Gating in Radial MRI using an Adapted Singular Spectrum Analysis (SSA-FARY). IEEE Transactions on Medical Imaging ;39:3029-3041 (2020) GitHub repository
- Xiaoqing Wang, Florian Kohler, Christina Unterberg-Buchwald, Joachim Lotz, Jens Frahm, Martin Uecker. Model-based myocardial T1 mapping with sparsity constraints using single-shot inversion-recovery radial FLASH cardiovascular magnetic resonance. Journal of Cardiovascular Magnetic Resonance 21:60 (2019) GitHub repository
- Sebastian Rosenzweig, H. Christian M. Holme, Martin Uecker. Simple Auto-Calibrated Gradient Delay Estimation From Few Spokes Using Radial Intersections (RING). Magnetic Resonance in Medicine 81:1898-1906 (2019) GitHub repository
- H. Christian M. Holme, Sebastian Rosenzweig, Frank Ong, Robin N. Wilke, Michael Lustig, Martin Uecker. ENLIVE: An Efficient Nonlinear Method for Calibrationless and Robust Parallel Imaging. Scientific Reports 9:3034 (2019) GitHub repository
- Sebastian Rosenzweig, H. Christian M. Holme, Robin N. Wilke, Dirk Voit, Jens Frahm, Martin Uecker. Simultaneous Multi-Slice Reconstruction Using Regularized Nonlinear Inversion: SMS-NLINV. Magnetic Resonance in Medicine 79:2057-2066 (2018) GitHub repository
- Martin Uecker and Michael Lustig. Estimating Absolute-Phase Maps Using ESPIRiT and Virtual Conjugate Coils. Magnetic Resonance in Medicine 77:1201-1207 (2017) GitHub repository
References
Configuration
By default, Markdown produces XHTML output for tags with empty elements.E.g.:
Markdown can be configured to produce HTML-style tags; e.g.:
Movable Type
You need to use a special MTMarkdownOptions
container tag in eachMovable Type template where you want HTML 4-style output:
The easiest way to use MTMarkdownOptions is probably to put theopening tag right after your tag, and the closing tag rightbefore
.
To suppress Markdown processing in a particular template, i.e. topublish the raw Markdown-formatted text without translation into(X)HTML, set the output
attribute to 'raw':
Command-Line
Use the --html4tags
command-line switch to produce HTML output from aUnix-style command line. E.g.:
Type perldoc Markdown.pl
, or read the POD documentation within theMarkdown.pl source code for more information.
Bugs
To file bug reports or feature requests please send email to:markdown@daringfireball.net.
Version History
1.0.1 (14 Dec 2004):
Changed the syntax rules for code blocks and spans. Previously, backslash escapes for special Markdown characters were processed everywhere other than within inline HTML tags. Now, the contents of code blocks and spans are no longer processed for backslash escapes. This means that code blocks and spans are now treated literally, with no special rules to worry about regarding backslashes.
NOTE: This changes the syntax from all previous versions ofMarkdown. Code blocks and spans involving backslash characterswill now generate different output than before.
Tweaked the rules for link definitions so that they must occur within three spaces of the left margin. Thus if you indent a link definition by four spaces or a tab, it will now be a code block.
IMPORTANT: This may affect existing Markdown content if itcontains link definitions indented by 4 or more spaces.
Added
>
,+
, and-
to the list of backslash-escapable characters. These should have been done when these characters were added as unordered list item markers.Trailing spaces and tabs following HTML comments and
tags are now ignored.Inline links using
<
and>
URL delimiters weren't working:Added a bit of tolerance for trailing spaces and tabs after Markdown hr's.
Fixed bug where auto-links were being processed within code spans:
Sort-of fixed a bug where lines in the middle of hard-wrapped paragraphs, which lines look like the start of a list item, would accidentally trigger the creation of a list. E.g. a paragraph that looked like this:
This is fixed for top-level lists, but it can still happen forsub-lists. E.g., the following list item will not be parsedproperly:
Given Markdown's list-creation rules, I'm not sure this canbe fixed.
Standalone HTML comments are now handled; previously, they'd get wrapped in a spurious
tag.
Fix for horizontal rules preceded by 2 or 3 spaces.
HTML tags in must occur within three spaces of left margin. (With 4 spaces or a tab, they should be code blocks, but weren't before this fix.)Capitalized 'With' in 'Markdown With SmartyPants' for consistency with the same string label in SmartyPants.pl. (This fix is specific to the MT plug-in interface.)
Auto-linked email address can now optionally contain a 'mailto:' protocol. I.e. these are equivalent:
Fixed annoying bug where nested lists would wind up with spurious (and invalid)
You can now write empty links:
and they'll be turned into anchor tags with empty href attributes.This should have worked before, but didn't.
***this***
and___this___
are now turned intoInstead of
which isn't valid. (Thanks to Michel Fortin for the fix.)
Added a new substitution in
_EncodeCode()
: s/$/$/g; This is only for the benefit of Blosxom users, because Blosxom (sometimes?) interpolates Perl scalars in your article bodies.Fixed problem for links defined with urls that include parens, e.g.:
'Chomsky' was being erroneously treated as the URL's title.
At some point during 1.0's beta cycle, I changed every sub's argument fetching from this idiom:
to:
The idea was to keep Markdown from doing any work in a subif the input was empty. This introduced a bug, though:if the input to any function was the single-character string'0', it would also evaluate as false and return immediately.How silly. Now fixed.
Donations
Donations to support Markdown's development are happily accepted. See:http://daringfireball.net/projects/markdown/ for details.
Copyright and License
Copyright (c) 2003-2004 John Gruber
http://daringfireball.net/
All rights reserved.
Redistribution and use in source and binary forms, with or withoutmodification, are permitted provided that the following conditions aremet:
Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
Neither the name 'Markdown' nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
This software is provided by the copyright holders and contributors 'asis' and any express or implied warranties, including, but not limitedto, the implied warranties of merchantability and fitness for aparticular purpose are disclaimed. In no event shall the copyright owneror contributors be liable for any direct, indirect, incidental, special,exemplary, or consequential damages (including, but not limited to,procurement of substitute goods or services; loss of use, data, orprofits; or business interruption) however caused and on any theory ofliability, whether in contract, strict liability, or tort (includingnegligence or otherwise) arising in any way out of the use of thissoftware, even if advised of the possibility of such damage.
List of Features
- basic features:
- runs on Linux and Mac OS X
- multi-dimensional operations on arrays
- fast non-uniform Fourier Transform (nuFFT and convolution-based method)
- multi-dimensional (divergence-free) wavelet transform
- parallel computation on multiple cores and with Graphical Processing Units (GPU)
- iterative methods:
- Conjugate Gradients (CG)
- (Fast) Iterative Soft-Thresholding Algorithm (ISTA and FISTA)
- Normalized iterative hard thresholding (NIHT)
- Alternating Direction Method of Multipliers (ADMM)
- Iteratively Regularized Gauss-Newton Method (IRGNM)
- Chambolle-Pock primal-dual algorithm
- calibration methods:
- direct calibration of coil sensitivities from k-space center
- Walsh's method for calibration of coil sensitivities
- ESPIRiT
- (geometric) channel compression and whitening
- RING: estimation of gradient delays for radial MRI
- reconstruction methods for MRI:
- iterative parallel imaging reconstruction: POCSENSE, SENSE
- compressed sensing and parallel imaging
- calibration-less parallel imaging: NLINV and ENLIVE (non-linear optimization) and SAKE (structured low-rank matrix completion)
- reconstruction with linear subspace constraints
- non-linear model-based reconstruction for T1 mapping
- regularization (in arbitrary dimensions):
- Tikhonov
- total variation
- l1-wavelet
- (multi-scale) low-rank
Example
Perform ESPIRiT calibration and image reconstruction with l1-wavelet regularization:
$ bart ecalib kspace sensitivities
$ bart pics -l1 -r0.001 kspace sensitivities image_out
A python-based image viewer (bartview.py) which can read the BART data format is included in the source repository.
An image viewer for Linux and Mac OS X can be found here.
You can try BART directly in your browser:
Mailing List
Please direct all questions or comments to the public mailing list:
(or contact the main author: martin.uecker at med.uni-goettingen.de)
Download
Note: The software is intended for research use only and NOT FOR DIAGNOSTIC USE. It comes without any warranty (see LICENSE for details).
Releases:
It is recommended to download the latest release. All releases can be found here.
Selected releases:
BART has also been included in Debian GNU/Linux (and Ubuntu). The Debian binary package can be reproducibly built from the source code (as distributed by Debian) and can be downloaded from here. Enter the silence mac os. There is also a package for the image viewer. We also provide unofficial packages for Fedora and CentOS: .
Please note that running BART on Windows is not supported. Nevertheless, some versions of BART are reported to work on Windows using WSL or Cygwin.
For developers: the C source code can be found in the GitHub repository
Installation
Installation of the required libraries, downloading and unpacking of the archive, and compilation on Linux is usually as simple as typing the following commands:
$ sudo apt-get install make gcc libfftw3-dev liblapacke-dev libpng-dev libopenblas-dev
$ wget https://github.com/mrirecon/bart/archive/vX.Y.ZZ.tar.gz
$ tar xzvf vX.YY.ZZ.tar.gz
$ cd bart-X.YY.ZZ
$ make
See the README file included with the source code for further instructions and for Mac OS X and Windows.
If you are a Docker user you can also start with this extremely simple Dockerfile.
Matlab Interface and Examples
The toolbox can also be used in combination with Matlab/Octave.
>> sensitivities = bart('ecalib', kspace);
>> image_out = bart('pics -l1 -r0.001', kspace, sensitivities);
More examples where the tools are called directly from Matlab can be found here.
Miki Miki Academy Demo Mac Os Catalina
Matlab code and data: GitHub repository
A Matlab-based image viewer which works well with BART is arrayShow by Tilman Sumpf.
Webinar and Workshop Materials with Examples
There are new tutorials from our Webinar which you can find in a GitHub repository.
The toolbox was presented at the ISMRM 2016 Data Sampling and Image Reconstruction Workshop. This material was created for BART version 0.3.00 and later versions might have minor differences. Please check the README included with each release for up-to-date installation instructions.
Miki Miki Academy Demo Mac Os X
Demo code and data: GitHub repository
Reproducible Research
This is a list of research paper which can be reproduced using BART.
- Xiaoqing Wang, Sebastian Rosenzweig, Nick Scholand, H.Christian M.Holme, Martin Uecker. Model-based Reconstruction for Simultaneous Multi-slice T1 Mapping using Single-shot Inversion-recovery Radial FLASH. Magnetic Resonance in Medicine. Early access. GitHub repository
- Sebastian Rosenzweig, Nick Scholand, H. Christian M. Holme, Martin Uecker. Cardiac and Respiratory Self-Gating in Radial MRI using an Adapted Singular Spectrum Analysis (SSA-FARY). IEEE Transactions on Medical Imaging ;39:3029-3041 (2020) GitHub repository
- Xiaoqing Wang, Florian Kohler, Christina Unterberg-Buchwald, Joachim Lotz, Jens Frahm, Martin Uecker. Model-based myocardial T1 mapping with sparsity constraints using single-shot inversion-recovery radial FLASH cardiovascular magnetic resonance. Journal of Cardiovascular Magnetic Resonance 21:60 (2019) GitHub repository
- Sebastian Rosenzweig, H. Christian M. Holme, Martin Uecker. Simple Auto-Calibrated Gradient Delay Estimation From Few Spokes Using Radial Intersections (RING). Magnetic Resonance in Medicine 81:1898-1906 (2019) GitHub repository
- H. Christian M. Holme, Sebastian Rosenzweig, Frank Ong, Robin N. Wilke, Michael Lustig, Martin Uecker. ENLIVE: An Efficient Nonlinear Method for Calibrationless and Robust Parallel Imaging. Scientific Reports 9:3034 (2019) GitHub repository
- Sebastian Rosenzweig, H. Christian M. Holme, Robin N. Wilke, Dirk Voit, Jens Frahm, Martin Uecker. Simultaneous Multi-Slice Reconstruction Using Regularized Nonlinear Inversion: SMS-NLINV. Magnetic Resonance in Medicine 79:2057-2066 (2018) GitHub repository
- Martin Uecker and Michael Lustig. Estimating Absolute-Phase Maps Using ESPIRiT and Virtual Conjugate Coils. Magnetic Resonance in Medicine 77:1201-1207 (2017) GitHub repository
References
A a generic reference (all versions): BART Toolbox for Computational Magnetic Resonance Imaging, DOI: 10.5281/zenodo.592960
- Martin Uecker. Machine Learning Using the BART Toolbox - Implementation of a Deep Convolutional Neural Network for Denoising. Joint Annual Meeting ISMRM-ESMRMB, Paris 2018, In Proc. Intl. Soc. Mag. Reson. Med. 26;2802
- Jonathan I Tamir, Frank Ong, Joseph Y Cheng, Martin Uecker, and Michael Lustig. Generalized Magnetic Resonance Image Reconstruction using The Berkeley Advanced Reconstruction Toolbox. ISMRM Workshop on Data Sampling and Image Reconstruction, Sedona 2016
- Martin Uecker, Frank Ong, Jonathan I Tamir, Dara Bahri, Patrick Virtue, Joseph Y Cheng, Tao Zhang, and Michael Lustig.Berkeley Advanced Reconstruction Toolbox. Annual Meeting ISMRM, Toronto 2015, In Proc. Intl. Soc. Mag. Reson. Med. 23:2486
- Martin Uecker, Patrick Virtue, Frank Ong, Mark J. Murphy, Marcus T. Alley, Shreyas S. Vasanawala, and Michael Lustig. Software Toolbox and Programming Library for Compressed Sensing and Parallel Imaging. ISMRM Workshop on Data Sampling and Image Reconstruction, Sedona 2013
- Martin Uecker, Peng Lai, Mark J. Murphy, Patrick Virtue, Michael Elad, John M. Pauly, Shreyas S. Vasanawala, and Michael Lustig. ESPIRiT - An Eigenvalue Approach to Autocalibrating Parallel MRI: Where SENSE meets GRAPPA. Magnetic Resonance in Medicine, 71:990-1001 (2014)